Information for 10-CAGACTAGCCTGA (Motif 11)

A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
Reverse Opposite:
A C G T A G T C C G T A A C T G A C T G A T G C A C G T C G T A C T A G A C G T A G T C C G A T A C T G
p-value:1e-11
log p-value:-2.594e+01
Information Content per bp:1.930
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.8 +/- 27.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAGACTAGCCTGA
-NNACTTGCCTT-
 A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGACTAGCCTGA--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAGCCTGA-
SCAGYCADGCATGAC
 A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAGCCTGA
BCAGACWA------
 A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTAGCCTGA
CCAGACRSVB----
 A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----CAGACTAGCCTGA-
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTAGCCTGA
TCCCAGMCRAGCCCC-
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C A C G T

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CAGACTAGCCTGA--
TGCAGTCATGCGTGACG
 A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CAGACTAGCCTGA
-GGATTAGC----
 A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CAGACTAGCCTGA
CGTTGGGGATTAGCCT--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C C G A T C G T A A T C G A G T C A G T C A C G T A C T G G T C A
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T A C G T