Information for 9-CATATAATTAAAC (Motif 10)

A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
Reverse Opposite:
C A T G C A G T A C G T C G A T T C G A C G T A A C G T A C G T C T G A G A C T C G T A C G A T T C A G
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.723
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.7 +/- 27.9bp
Average Position of motif in Background62.7 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MNX1/MA0707.1/Jaspar

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CATATAATTAAAC
--GGTAATTAAA-
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T C T A G T A C G A G C T G T C A G T C A G A C T C G A T C G T A C G T A G T C A A C G T

VAX1/MA0722.1/Jaspar

Match Rank:2
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CATATAATTAAAC
---NTAATTAG--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T A C G T C T A G G A C T G T C A G C T A C A G T C A G T C T G A T C A G A C G T A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:3
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CATATAATTAAAC
---TTAATTAA--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T A C G T A C G T G A C T C G T A G C T A C G A T C G A T G C T A T C G A A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CATATAATTAAAC--
NNNTTTTAATTAANNNN
 A C G T A C G T A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C A C G T A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

ALX3/MA0634.1/Jaspar

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CATATAATTAAAC
--TCTAATTAAA-
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T G A C T A G T C G A C T C T G A G T C A G C A T G A C T G C T A T C G A T G C A A C G T

mix-a/MA0621.1/Jaspar

Match Rank:6
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CATATAATTAAAC
--NCTAATTAANN
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

LMX1A/MA0702.1/Jaspar

Match Rank:7
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CATATAATTAAAC
---TTAATTAA--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T A C G T A G C T G A C T C T G A G C T A G C A T C G A T C T G A T C G A A C G T A C G T

VAX2/MA0723.1/Jaspar

Match Rank:8
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CATATAATTAAAC
---NTAATTAG--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T A C G T T C A G G A C T G T C A G C T A C G A T C A G T C T G A T C A G A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:9
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CATATAATTAAAC
---NTAATTAG--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T A C G T A C G T T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CATATAATTAAAC
-ADBTAATTAR--
 A G T C C G T A C G A T C T G A A G C T G T C A C G T A C G A T A C G T C G T A C G T A G T C A G A T C
A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G A C G T A C G T