Information for 1-HGGGGRWTTCCCN (Motif 1)

G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
Reverse Opposite:
C T A G C T A G A C T G C T A G T C G A G T C A C G T A A G C T G A T C G T A C G T A C G A T C C G A T
p-value:1e-89
log p-value:-2.052e+02
Information Content per bp:1.629
Number of Target Sequences with motif129.0
Percentage of Target Sequences with motif18.02%
Number of Background Sequences with motif805.0
Percentage of Background Sequences with motif1.64%
Average Position of motif in Targets51.0 +/- 21.8bp
Average Position of motif in Background50.1 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:HGGGGRWTTCCCN
NGGGGATTTCCC-
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.90
Offset:1
Orientation:forward strand
Alignment:HGGGGRWTTCCCN
-GGGGATTTCC--
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.90
Offset:2
Orientation:forward strand
Alignment:HGGGGRWTTCCCN
--GGGGATTTCC-
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.87
Offset:1
Orientation:forward strand
Alignment:HGGGGRWTTCCCN
-GGGAATTTCC--
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:HGGGGRWTTCCCN-
--GGGGATTCCCCC
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C A C G T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:HGGGGRWTTCCCN
AGGGGAATCCCCT
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:HGGGGRWTTCCCN
-GGGAATTTCC--
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:HGGGGRWTTCCCN
AGGGGATTCCCCT
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----HGGGGRWTTCCCN
NNNATTGGGGGTNTCCT-
 A C G T A C G T A C G T A C G T A C G T G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:HGGGGRWTTCCCN--
-----HTTTCCCASG
 G C T A C A T G A C T G A C T G C T A G T C G A G C A T A C G T A G C T A G T C A G T C G A T C G A T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G