Information for 17-RWATGCATATAGAAWG (Motif 30)

C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
Reverse Opposite:
A G T C C G A T C A G T A C G T A G T C C G A T C T G A A C G T C G T A A C G T A C T G A G T C C T G A A G C T C G T A A G C T
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.755
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.3 +/- 27.8bp
Average Position of motif in Background48.6 +/- 47.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---RWATGCATATAGAAWG
AAAATATGCATAATAAA--
 A C G T A C G T A C G T C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RWATGCATATAGAAWG
AYATGYATATGCATR-
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RWATGCATATAGAAWG
ATATGCAAATNNN---
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:RWATGCATATAGAAWG
ATATGCAAAT------
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--RWATGCATATAGAAWG
TTGTATGCAAATTAGA--
 A C G T A C G T C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:RWATGCATATAGAAWG
--ATGMATATDC----
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:RWATGCATATAGAAWG
TTATGCAAAT------
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RWATGCATATAGAAWG
TTGTATGCAAATTAGA--
 A C G T A C G T C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--RWATGCATATAGAAWG
TTGTATGCAAATTAGA--
 A C G T A C G T C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:RWATGCATATAGAAWG
-TATGCAAAT------
 C T G A C G A T C T G A A G C T C T A G G T A C C G T A C G A T C G T A A G C T C G T A C T A G G T C A G C T A C G T A A C T G
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T