Information for 13-AACCATAAAA (Motif 46)

C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G A T A C G T
p-value:1e-7
log p-value:-1.775e+01
Information Content per bp:1.963
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets41.8 +/- 25.5bp
Average Position of motif in Background35.6 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--AACCATAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AACCATAAAA
AAGCCATAAAA
 A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.78
Offset:1
Orientation:forward strand
Alignment:AACCATAAAA
-GCAATAAAA
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AACCATAAAA-
-GTCATAAAAN
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:AACCATAAAA--
NGYCATAAAWCH
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.75
Offset:0
Orientation:forward strand
Alignment:AACCATAAAA
NCYAATAAAA
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AACCATAAAA-
-CCAATAAAAA
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AACCATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.75
Offset:1
Orientation:forward strand
Alignment:AACCATAAAA-
-CCAATAAAAC
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:AACCATAAAA-
-CCAATAAAAA
 C G T A C G T A A G T C A G T C C G T A A C G T C G T A C G T A C G T A C G T A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A