Information for 20-TGTVGRTCACTGA (Motif 41)

C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
Reverse Opposite:
G A C T G T A C G C T A T C A G A C G T A C T G G T C A A G T C A G T C A G T C T G C A G T A C G T C A
p-value:1e-8
log p-value:-1.909e+01
Information Content per bp:1.628
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.34%
Number of Background Sequences with motif378.9
Percentage of Background Sequences with motif0.81%
Average Position of motif in Targets49.5 +/- 25.7bp
Average Position of motif in Background49.9 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGTVGRTCACTGA
SCTGTCAVTCAV---
 A C G T A C G T C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGTVGRTCACTGA
NCTGTCAATCAN---
 A C G T A C G T C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:3
Score:0.68
Offset:4
Orientation:forward strand
Alignment:TGTVGRTCACTGA
----AGTCACGC-
 C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---TGTVGRTCACTGA
GSCTGTCACTCA----
 A C G T A C G T A C G T C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T

FOS/MA0476.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGTVGRTCACTGA
TGTGACTCATT--
 C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
C A G T T A C G A C G T A C T G C G T A A T G C A C G T A G T C C G T A A G C T A G C T A C G T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGTVGRTCACTGA
AAYTAGGTCA----
 A C G T C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGTVGRTCACTGA----
-GTAGGTCACTGGGTCA
 C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A A C G T A C G T A C G T A C G T
A C G T A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGTVGRTCACTGA
TATAAGTAGGTCAA---
 A C G T A C G T A C G T A C G T C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TGTVGRTCACTGA
-----GTCATN--
 C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGTVGRTCACTGA
---AGGTCA----
 C A G T A C T G A C G T T C A G T C A G T C A G C A G T A G T C C G T A A G T C C G A T C A T G C T G A
A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T