Information for 7-GGGGATTTCC (Motif 9)

C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C
Reverse Opposite:
C T A G C T A G C T G A C G T A C G T A A G C T A G T C G T A C A T G C A G T C
p-value:1e-14
log p-value:-3.282e+01
Information Content per bp:1.868
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif59.9
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets47.9 +/- 21.8bp
Average Position of motif in Background47.7 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGGATTTCC
 C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GGGGATTTCC-
NGGGGATTTCCC
 A C G T C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGAATTTCC
 C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCC
GGGGATTTCC
 C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCC
GGGAATTTCC
 C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCC--
GGGGATTCCCCC
 C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GGGGATTTCC--
AGGGGATTCCCCT
 A C G T C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGGGATTTCC--
AGGGGATTCCCCT
 A C G T C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGGGATTTCC----
AGGGGGATTAGCTGCC
 A C G T A C G T C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GGGGATTTCC--
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T C T A G A T C G A C T G A C T G T C G A A C G T A C G T A G C T A G T C G A T C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T