Information for 2-TWATTGCTGCCAGGCT (Motif 2)

A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
Reverse Opposite:
C G T A A T C G G T A C G A T C A C G T A C T G A C T G A T G C C G T A A C T G G T A C G T C A C G T A A C G T G C T A C G T A
p-value:1e-16
log p-value:-3.862e+01
Information Content per bp:1.783
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.4 +/- 20.4bp
Average Position of motif in Background30.2 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hmx1/MA0896.1/Jaspar

Match Rank:1
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TWATTGCTGCCAGGCT
ANNCATTAATTGCTNGN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------TWATTGCTGCCAGGCT
ANNCATTAATTGCTNGN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
T G C A G C A T A C G T A T G C G C T A G C A T G C A T C T G A C G T A C A G T G A C T C T A G A G T C G A C T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TWATTGCTGCCAGGCT
------TTGCCAAG--
 A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TWATTGCTGCCAGGCT
ATGATKGATGRC-----
 A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TWATTGCTGCCAGGCT
TGATTTATGGC-----
 A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C A C G T A C G T A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TWATTGCTGCCAGGCT
TTTGATTGATGN------
 A C G T A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T A C G T A C G T A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TWATTGCTGCCAGGCT
NNANTGATTGATNTTN----
 A C G T A C G T A C G T A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TWATTGCTGCCAGGCT---
---ACTATGCCAACCTACC
 A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TWATTGCTGCCAGGCT
TAATTGGT--------
 A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
A G C T C G T A C G T A A C G T C A G T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TWATTGCTGCCAGGCT
NNANTGATTGATNNNN----
 A C G T A C G T A C G T A C G T A C G T C G A T G T C A A C G T A C G T A C T G G T A C A C G T T A C G G T A C A G T C G T C A C A T G A C T G A T G C A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C A C G T A C G T A C G T A C G T