Information for 1-AHBATGGCGG (Motif 1)

T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G
Reverse Opposite:
A G T C T G A C A C T G G T A C A T G C C G T A C G A T T G A C C G A T A G C T
p-value:1e-54
log p-value:-1.251e+02
Information Content per bp:1.645
Number of Target Sequences with motif124.0
Percentage of Target Sequences with motif13.61%
Number of Background Sequences with motif1021.0
Percentage of Background Sequences with motif2.34%
Average Position of motif in Targets53.0 +/- 24.6bp
Average Position of motif in Background50.8 +/- 37.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1(Zf)/Promoter/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-AHBATGGCGG-
CAAGATGGCGGC
 A C G T T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-AHBATGGCGG-
CAAGATGGCGGC
 A C G T T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:AHBATGGCGG--
-TAATGGCGGNC
 T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AHBATGGCGG------
NAGANTGGCGGGGNGNA
 A C G T T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AHBATGGCGG
---TTGGCA-
 T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AHBATGGCGG-
--NTTGGCANN
 T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AHBATGGCGG-
---TWGTCTGV
 T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AHBATGGCGG------
NNTNNTGTCTGGNNTNG
 A C G T T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AHBATGGCGG
--CATGAC--
 T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G
A C G T A C G T T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AHBATGGCGG------
NNNNTTGGCGCCGANNN
 A C G T T C G A G C T A A C T G C G T A C G A T A T C G A C T G A G T C A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G