Information for 3-GGTKAMAGAAGWCAGC (Motif 3)

A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
Reverse Opposite:
A T C G G T A C A C G T A C T G C G T A A T G C C G A T A C G T A G T C A C G T A C T G A C G T G T C A C T G A A G T C A G T C
p-value:1e-14
log p-value:-3.258e+01
Information Content per bp:1.769
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif7.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.2 +/- 28.8bp
Average Position of motif in Background62.4 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX1/MA0782.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC
--TGACAGGTGTCA--
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
A C G T A C G T G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T A C G T

TGIF2/MA0797.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC
--TGACAGCTGTCA--
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
A C G T A C G T G C A T C T A G C T G A G A T C C T G A C A T G T A G C G A C T C T A G G A C T A T G C C G T A A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC
--TGACAGGTGTCA--
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
A C G T A C G T C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC
--TGACAGCTGTCA--
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
A C G T A C G T G C A T T C A G T C G A A G T C T C G A A C T G T A G C A G C T T A C G G C A T G T A C C G T A A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC-
--TGACANARRCCAGRC
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C A C G T
A C G T A C G T C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Nr2e1/MA0676.1/Jaspar

Match Rank:6
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC
------AAAAGTCAA-
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGTKAMAGAAGWCAGC-
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.50
Offset:5
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC-
-----ATGACGTCATCN
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C T G C T G A A G T C T C A G G A C T G T A C C G T A A G C T A G T C G A T C

PB0126.1_Gata5_2/Jaspar

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGTKAMAGAAGWCAGC--
-GACAGAGATATCAGTGT
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C A C G T A C G T
A C G T T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:10
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:GGTKAMAGAAGWCAGC-
-----ATGACGTCAYYN
 A C T G C T A G A G C T A C G T G T C A G T A C G T C A A C T G C G T A C G T A A T C G C G A T A G T C G T C A A C T G A T G C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G C A T A C T G C T G A A G T C T C A G G C A T T G A C C G T A A G C T A G T C T A C G