Information for 10-YCSYCACTRGCCC (Motif 20)

A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
Reverse Opposite:
A T C G A C T G A C T G A G T C A G T C C G T A A C T G A C G T A C T G C T G A T A G C A C T G C T G A
p-value:1e-7
log p-value:-1.712e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.6 +/- 25.7bp
Average Position of motif in Background41.5 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YCSYCACTRGCCC-
---NNACTTGCCTT
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C A C G T
A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:YCSYCACTRGCCC
--CCGATTGGCT-
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YCSYCACTRGCCC---
CAATCACTGGCAGAAT
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

HES5/MA0821.1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:YCSYCACTRGCCC
-CGGCACGTGCCA
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A

PLAG1/MA0163.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:YCSYCACTRGCCC-
CCCCCTTGGGCCCC
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C A C G T
A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YCSYCACTRGCCC
NAGGTCANTGACCT
 A C G T A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:YCSYCACTRGCCC--
---TGATTGGCTANN
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:YCSYCACTRGCCC
--GTCACATGAY-
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T

HEY1/MA0823.1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:YCSYCACTRGCCC
--GACACGTGCC-
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
A C G T A C G T T A C G T C G A A G T C T C G A A G T C A T C G A G C T C T A G A G T C T G A C A C G T

HES7/MA0822.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:YCSYCACTRGCCC
-TGGCACGTGCCA
 A G C T A G T C A T C G A G C T A G T C C G T A A G T C A C G T C T A G A C T G A G T C A G T C A T G C
A C G T G A C T T C A G T C A G G A T C T C G A A G T C C T A G G A C T T C A G G A T C A G T C C T G A