Information for 1-CAGCCAATCA (Motif 1)

G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A
Reverse Opposite:
A G C T A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T C T A G
p-value:1e-76
log p-value:-1.768e+02
Information Content per bp:1.756
Number of Target Sequences with motif236.0
Percentage of Target Sequences with motif23.81%
Number of Background Sequences with motif2446.8
Percentage of Background Sequences with motif5.79%
Average Position of motif in Targets48.9 +/- 27.7bp
Average Position of motif in Background47.2 +/- 41.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATCA
ACTAGCCAATCA
 A C G T A C G T G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:CAGCCAATCA-
-AGCCAATCGG
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAATCA-------
TGGACCAATCAGCACTCT
 A C G T G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.81
Offset:3
Orientation:forward strand
Alignment:CAGCCAATCA-
---CCAATCAA
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATCA------
CGACCCAATCAACGGTG
 A C G T G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATCA
-TGCCAA---
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.71
Offset:3
Orientation:forward strand
Alignment:CAGCCAATCA---
---CAAATCACTG
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CAGCCAATCA-
---CCAATTAA
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CAGCCAATCA--
--CCCAATTAGC
 G A T C T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C G A A C G T A C G T
A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C