Information for 3-CCTGGCRGCAGMGGAC (Motif 5)

A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
Reverse Opposite:
T A C G A G C T A G T C A G T C A C G T A G T C A C G T A C T G T A G C G A C T A C T G G T A C A G T C C G T A C A T G A T C G
p-value:1e-15
log p-value:-3.556e+01
Information Content per bp:1.752
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.3 +/- 30.3bp
Average Position of motif in Background42.0 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC
SCTGTCARCACC----
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCRGCAGMGGAC
SCCTAGCAACAG-----
 A C G T A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC-------
---GCCASCAGGGGGCGCYVNNG
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC
NTTGGCANN-------
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTGGCRGCAGMGGAC
-TTGGCA---------
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTGGCRGCAGMGGAC----
-TGGCCACCAGGGGGCGCTA
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC
CTTGGCAA--------
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC-----
-TGGCCACCAGGTGGCACTNT
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCRGCAGMGGAC
VGCTGWCAVB-------
 A C G T A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CCTGGCRGCAGMGGAC
------AACAGATGGC
 A T G C G T A C A C G T A C T G A C T G G T A C C T G A A T C G A G T C G T C A A C T G T G C A C T A G A C T G C T G A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C