Information for 5-AGAGAAGCAGYTCCCC (Motif 11)

C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
Reverse Opposite:
C T A G C T A G C A T G A C T G C T G A T C G A T G A C A C G T C T A G G A T C A G C T A C G T A T G C A C G T A G T C A C G T
p-value:1e-10
log p-value:-2.465e+01
Information Content per bp:1.668
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif26.7
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets61.3 +/- 26.2bp
Average Position of motif in Background56.3 +/- 23.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Spz1/MA0111.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAGAAGCAGYTCCCC
AGGGTAACAGC-----
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T A C G T

PB0047.1_Myf6_1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGAGAAGCAGYTCCCC-
-GAAGAACAGGTGTCCG
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C A C G T
A C G T T C A G T C G A C T G A A T C G T C G A C T G A A G T C C G T A A T C G A C T G G A C T A C T G A C G T A G T C G A T C A C T G

Gata1/MA0035.3/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAAGCAGYTCCCC
ANAGATAAGAA-------
 A C G T A C G T C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AGAGAAGCAGYTCCCC
--NGNGACAGCTGCN-
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:AGAGAAGCAGYTCCCC
-----AGCAGCTGCT-
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGAGAAGCAGYTCCCC
---NNAGCAGCTGCT-
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:7
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:AGAGAAGCAGYTCCCC
-----CGCAGCTGCG-
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGAGAAGCAGYTCCCC
ADGGYAGYAGCATCT-
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGAGAAGCAGYTCCCC
NCAGATAAGAANNN----
 A C G T A C G T C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AGAGAAGCAGYTCCCC
----SDGCAGGTGCNS
 C G T A A C T G T C G A T A C G T G C A C T G A C A T G A G T C C G T A A C T G A G C T A G C T A G T C G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C