Information for 8-TRACAAAKGTDAG (Motif 2)

A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
Reverse Opposite:
G T A C G A C T G T C A C G T A G T A C G T C A A G C T A C G T A C G T C T A G A C G T G A C T C T G A
p-value:1e-11
log p-value:-2.697e+01
Information Content per bp:1.633
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.52%
Number of Background Sequences with motif768.6
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets57.6 +/- 26.8bp
Average Position of motif in Background49.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TRACAAAKGTDAG
-RACAAWGG----
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TRACAAAKGTDAG
-AACAAAGG----
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TRACAAAKGTDAG
--ACAAAG-----
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TRACAAAKGTDAG
---CAAAGGTCAG
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Twist2/MA0633.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TRACAAAKGTDAG
-ACCATATGTT--
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
A C G T C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TRACAAAKGTDAG
AAAACAAAGG----
 A C G T A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TRACAAAKGTDAG
ANGNAAAGGTCA-
 A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TRACAAAKGTDAG
VRRACAAWGG----
 A C G T A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----TRACAAAKGTDAG
AAAAATAACAAACGG---
 A C G T A C G T A C G T A C G T A C G T A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TRACAAAKGTDAG
GGAACAAAGR----
 A C G T A G C T C T G A T G C A G A T C C G T A T G C A C T G A C A G T C A T G A C G T C A G T C T G A C A T G
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T