Information for 7-GTCACTMAAA (Motif 8)

C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
Reverse Opposite:
C G A T A C G T A C G T A C G T C G T A A T C G A G C T C T A G C T G A G T A C
p-value:1e-11
log p-value:-2.735e+01
Information Content per bp:1.794
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif119.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets47.2 +/- 26.5bp
Average Position of motif in Background49.2 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTCACTMAAA
SCTGTCAVTCAV-
 A C G T A C G T A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTCACTMAAA
NCTGTCAATCAN-
 A C G T A C G T A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTCACTMAAA
AGCCACTCAAG
 A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCACTMAAA
GSCTGTCACTCA--
 A C G T A C G T A C G T A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GTCACTMAAA----
CTACCAATAAAATTCT
 A C G T A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GTCACTMAAA
AASCACTCAA-
 A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTMAAA
MRSCACTYAA-
 A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCACTMAAA-----
AATGCAATAAAATTTAT
 A C G T A C G T C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTCACTMAAA
RSCACTYRAG
 C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTCACTMAAA
NSCACTYVAV
 C A T G G A C T A G T C C T G A A T G C C G A T T G C A G T C A G T C A C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G