Information for 14-CAGGGCTAAGTCC (Motif 21)

A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C
Reverse Opposite:
A C T G A C T G G T C A A G T C A C G T A C G T C T G A A C T G A G T C A G T C G T A C A C G T A C T G
p-value:1e-7
log p-value:-1.701e+01
Information Content per bp:1.940
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.6 +/- 32.6bp
Average Position of motif in Background54.0 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGGGCTAAGTCC---
GGGGTCAAAGTCCAAT
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGGGCTAAGTCC-
AGAGTCCAAAGTCCA
 A C G T A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGGCTAAGTCC-
CANAGNNCAAAGTCCA
 A C G T A C G T A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGGCTAAGTCC-
TAGGGCAAAGGTCA
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGGGCTAAGTCC-----
--GGCAAAAGTCCAATAA
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Zfx/MA0146.2/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGGGCTAAGTCC-
CAGGCCNNGGCCNN
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAGGGCTAAGTCC
CAAGGHCANV---
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CAGGGCTAAGTCC-
------TAATCCCN
 A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CAGGGCTAAGTCC-
GTAGGGCAAAGGTCA
 A C G T A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGCTAAGTCC
CNAGGCCT------
 A C G T A G T C C G T A A C T G A C T G A C T G A G T C A G C T C G T A C G T A A C T G A C G T A G T C G T A C
A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T