Information for 6-GMCTGCACAGCCC (Motif 13)

A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C
Reverse Opposite:
A C T G C T A G A C T G G A T C G C A T T A C G A C G T A T C G G T A C C G T A A C T G A C T G T A G C
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.674
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.12%
Number of Background Sequences with motif485.9
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets49.1 +/- 23.5bp
Average Position of motif in Background48.1 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GMCTGCACAGCCC---
--NAGCCCCGCCCCCN
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GMCTGCACAGCCC--
---GGCCCCGCCCCC
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.56
Offset:7
Orientation:forward strand
Alignment:GMCTGCACAGCCC---
-------CTGCCCGCA
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GMCTGCACAGCCC
-ACTACAATTCCC
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C
A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GMCTGCACAGCCC
-----CACAGN--
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GMCTGCACAGCCC------
--TCACCCCGCCCCAAATT
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GMCTGCACAGCCC---
----GCTCCGCCCMCY
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

KLF5/MA0599.1/Jaspar

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GMCTGCACAGCCC-
----GCCCCGCCCC
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C T G A G T C A G T C G T A C A G T C C T A G A G T C A G T C A G T C G A T C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GMCTGCACAGCCC-
TCCCAGMCRAGCCCC
 A C G T A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

SP1/MA0079.3/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GMCTGCACAGCCC--
----GCCCCGCCCCC
 A T C G G T A C G T A C G C A T C A T G A T G C G T C A A G T C C G T A C A T G G T A C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C