Information for 4-GGGAACAAGGATAGAG (Motif 5)

A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T G T A C A C G T T C G A A C G T A G T C A G T C A C G T A C G T C T A G A C G T A C G T A G T C A T G C A G T C
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.912
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.5 +/- 21.1bp
Average Position of motif in Background42.9 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGGAACAAGGATAGAG
-GGAACAAAGR-----
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGGAACAAGGATAGAG
NNAGGGACAAGGGCNC--
 A C G T A C G T A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGGAACAAGGATAGAG-
------AAGGATATNTN
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGGAACAAGGATAGAG
-VRRACAAWGG-----
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGGAACAAGGATAGAG--
---AACAATGGTAGTGTT
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGGAACAAGGATAGAG
-----CAAGGHCANV-
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGGAACAAGGATAGAG
NNNTAACAATTATAN--
 A C G T A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:8
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GGGAACAAGGATAGAG
NNNNGGGGGAAGANGG------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
C T A G A C G T A T C G T C G A C T A G C A T G T A C G C T A G C T A G C T G A C G T A C T A G T G C A G A T C C T A G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GGGAACAAGGATAGAG--
---AACAATGNTATTGTT
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGGAACAAGGATAGAG
-AAAACAATGG-----
 A C T G A T C G C T A G C G T A C G T A A G T C G T C A G T C A A C T G A C T G C G T A A C G T C G T A A C T G C G T A A C T G
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T