Information for 1-CCAATCRVRGSCC (Motif 1)

A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
Reverse Opposite:
T C A G T A C G A T C G A G T C A G C T A T G C A G T C A T C G C T G A A C G T A C G T A C T G C T A G
p-value:1e-26
log p-value:-6.129e+01
Information Content per bp:1.647
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif13.42%
Number of Background Sequences with motif840.8
Percentage of Background Sequences with motif1.80%
Average Position of motif in Targets47.4 +/- 24.3bp
Average Position of motif in Background49.0 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CCAATCRVRGSCC
AGCCAATCGG-----
 A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.81
Offset:-7
Orientation:forward strand
Alignment:-------CCAATCRVRGSCC
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----CCAATCRVRGSCC-
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CCAATCRVRGSCC
ACTAGCCAATCA------
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCAATCRVRGSCC
CCAATCAA-----
 A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCAATCRVRGSCC
TGCCAA---------
 A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCAATCRVRGSCC
CAAATCACTG---
 A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CCAATCRVRGSCC
CGTGCCAAG--------
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAATCRVRGSCC
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAATCRVRGSCC
CCAATTAA-----
 A G T C G T A C C G T A G T C A A G C T T A G C C T A G T A C G T C G A C T A G T A G C A T G C A G T C
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T A C G T A C G T A C G T