Information for 3-RATGAGKAAAMATWRS (Motif 5)

C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
Reverse Opposite:
A T C G A G C T C G A T C T G A A C G T A C G T A C G T A C G T A C G T G T C A A G T C A C G T A G T C C G T A A C G T A G T C
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.853
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.75%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.2 +/- 21.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:RATGAGKAAAMATWRS
--AAAGTAAACA----
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:RATGAGKAAAMATWRS
--AAAGTAAACA----
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:RATGAGKAAAMATWRS
--WAAGTAAAYA----
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RATGAGKAAAMATWRS
-CAAAGTAAACANNNN
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXC1/MA0032.2/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RATGAGKAAAMATWRS
--TATGTAAATAT---
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RATGAGKAAAMATWRS
NCTAAGTAAACA----
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---RATGAGKAAAMATWRS
NNNVCTGWGYAAACASN--
 A C G T A C G T A C G T C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:RATGAGKAAAMATWRS
NCWRWGTAAACANSV-
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:9
Score:0.64
Offset:5
Orientation:forward strand
Alignment:RATGAGKAAAMATWRS
-----GTAAACAT---
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T C A C G T A T C G A G A T C C G T A C G A T A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RATGAGKAAAMATWRS
--TATGTAAACANG--
 C T A G C G T A A C G T A C T G C G T A A C T G A C G T C G T A C G T A C G T A G T C A C G T A A G C T C G T A C T G A A T G C
A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T A C G T