Information for 4-GAMACTYTGT (Motif 12)

A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T
Reverse Opposite:
T C G A G T A C C G T A T C A G C G T A C T A G C G A T A C G T A G C T A G T C
p-value:1e-9
log p-value:-2.230e+01
Information Content per bp:1.761
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif243.4
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets49.5 +/- 28.2bp
Average Position of motif in Background47.2 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX10/MA0442.1/Jaspar

Match Rank:1
Score:0.69
Offset:4
Orientation:forward strand
Alignment:GAMACTYTGT
----CTTTGT
 A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T
A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GAMACTYTGT
AGGVNCCTTTGT
 A C G T A C G T A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAMACTYTGT---
TWGHWACAWTGTWDC
 A C G T A C G T A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GAMACTYTGT---
YDGHTACAWTGTADC
 A C G T A C G T A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.63
Offset:3
Orientation:forward strand
Alignment:GAMACTYTGT---
---YCTTTGTTCC
 A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GAMACTYTGT---
---CCWTTGTYYB
 A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAMACTYTGT---
---CCTTTGTTTT
 A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAMACTYTGT------
TNNTCCTTTGTTCTNNT
 A C G T A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAMACTYTGT--
VAGRACAKWCTGTYC
 A C G T A C G T A C G T A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAMACTYTGT-
---CCWTTGTY
 A C T G T C G A G T C A C G T A A G T C A C G T A G T C A C G T A C T G A G C T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T