Information for 1-TGGTGGTWTCCMAGCT (Motif 1)

C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
Reverse Opposite:
C G T A A C T G A G T C A C G T C A G T A C T G C T A G C G T A C G T A C G T A G T A C G A T C T C G A A T G C A G T C C G T A
p-value:1e-14
log p-value:-3.401e+01
Information Content per bp:1.759
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.3 +/- 22.6bp
Average Position of motif in Background57.7 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT
-GGGGATTTCC-----
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT
NGGGGATTTCCC----
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT
-GGGGATTTCC-----
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----TGGTGGTWTCCMAGCT
NNNATTGGGGGTNTCCT----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T A C G T A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT
-GGGAATTTCC-----
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T A C G T

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGTGGTWTCCMAGCT-----
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGTGGTWTCCMAGCT
-GGGAATTTCC-----
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT---
----TGTTKCCTAGCAACM
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:TGGTGGTWTCCMAGCT
-----HTTTCCCASG-
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T

STAT3/MA0144.2/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TGGTGGTWTCCMAGCT-
------TTTCCCAGAAN
 C G A T A C T G A T C G A C G T C A T G A C T G C G A T C G A T A C G T A G T C A G T C G T A C C G T A T A C G A G T C C G A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G