Information for 3-CAGGDGGCGCYCB (Motif 2)

A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
Reverse Opposite:
T G C A A C T G C T A G A T C G T A G C A C T G A G T C G A T C G C A T A G T C A G T C G A C T T C A G
p-value:1e-33
log p-value:-7.813e+01
Information Content per bp:1.635
Number of Target Sequences with motif87.0
Percentage of Target Sequences with motif9.65%
Number of Background Sequences with motif898.6
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets50.8 +/- 23.6bp
Average Position of motif in Background49.2 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0052.1_Plagl1_1/Jaspar

Match Rank:1
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CAGGDGGCGCYCB---
TTGGGGGCGCCCCTAG
 A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CAGGDGGCGCYCB--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CAGGDGGCGCYCB-
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------CAGGDGGCGCYCB
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CAGGDGGCGCYCB
-----GGCGCGCT
 A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGGDGGCGCYCB---
NNNNTTGGCGCCGANNN
 A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

POL003.1_GC-box/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGGDGGCGCYCB
AGGGGGCGGGGCTG-
 A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGGDGGCGCYCB
RGKGGGCGGAGC---
 A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T

SP1/MA0079.3/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGGDGGCGCYCB
GGGGGCGGGGC---
 A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CAGGDGGCGCYCB
TGTCAGGGGGCG----
 A C G T A C G T A C G T A G T C C T G A T C A G A C T G C G T A C A T G A C T G T G A C A C T G A T G C G A T C T G A C A C G T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T