Information for 3-GGGRAATTCC (Motif 4)

C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
Reverse Opposite:
A C T G A C T G C T G A C G T A G A C T A G C T G A T C G T A C A G T C G T A C
p-value:1e-17
log p-value:-3.994e+01
Information Content per bp:1.710
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.81%
Number of Background Sequences with motif359.8
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets51.4 +/- 24.2bp
Average Position of motif in Background51.1 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC-
NGGGGATTTCCC
 A C G T C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGGATTTCC
 C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGGATTTCC
 C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GGGRAATTCC
GGGAATTTCC
 C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:5
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-GGGRAATTCC--
AGGGGAATCCCCT
 A C G T C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GGGRAATTCC
GGGAATTTCC
 C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC-
GGGGGAATCCCC
 A C G T C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC--
AGGGGAATCCCCT
 A C G T C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C A C G T A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:GGGRAATTCC---
---RCATTCCWGG
 C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

MZF1/MA0056.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGGRAATTCC
TGGGGA-----
 A C G T C A T G A C T G A C T G C T A G T C G A C T G A G C A T G A C T G T A C A G T C
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T