Information for 21-AGAAAWAAAATCC (Motif 21)

C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
Reverse Opposite:
C A T G C A T G T C G A G A C T A G C T A C G T C G A T G C A T G C A T A C G T G A C T G A T C G A C T
p-value:1e-6
log p-value:-1.582e+01
Information Content per bp:1.660
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif136.7
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets58.7 +/- 30.0bp
Average Position of motif in Background48.4 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGAAAWAAAATCC
TACTGGAAAAAAAA---
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGAAAWAAAATCC-
AGAGCCATAAAATTCG
 A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGAAAWAAAATCC
GTTAAAAAAAAAAATTA
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAAAWAAAATCC
-GTCATAAAAN--
 C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AGAAAWAAAATCC
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAAAWAAAATCC
AAGCCATAAAA---
 A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAAAWAAAATCC-
TAGGTAATAAAATTCA
 A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAAAWAAAATCC-
CTACCAATAAAATTCT
 A C G T A C G T C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGAAAWAAAATCC
-GCAATAAAAA--
 C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAAAWAAAATCC
GGTAATAAAAA--
 C G T A C T A G C T G A C G T A C G T A C G T A G C T A T G C A C T G A C T G A A G C T G T A C G A T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T