Information for 20-CCAGAGTTGCCTA (Motif 20)

A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A C T G A G T C C G T A C G T A A G T C A C G T A G T C A C G T A C T G A C T G
p-value:1e-7
log p-value:-1.627e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 34.5bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA
--NNACTTGCCTT
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA-
----ATTTGCATAT
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCAGAGTTGCCTA-
----ATTTGCATAA
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA
----ATTTGCATA
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A
A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.53
Offset:5
Orientation:forward strand
Alignment:CCAGAGTTGCCTA--
-----GGTGCCAAGT
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCAGAGTTGCCTA-
-TTCATTTGCATAT
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T
A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA---
TNTAATTTGCATACNA
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA---
TNTAATTTGCATACNA
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CCAGAGTTGCCTA---
TNTAATTTGCATANNN
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:forward strand
Alignment:CCAGAGTTGCCTA-
-----ATTGCATAA
 A G T C A G T C C G T A A C T G C G T A A C T G A C G T A C G T A C T G A G T C A G T C A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A