Information for 9-TGTCTGACTCCCA (Motif 9)

A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
Reverse Opposite:
A G C T A C T G C T A G C T A G C G T A A C T G G C A T A G T C C G T A A T C G C G T A G T A C C G T A
p-value:1e-10
log p-value:-2.461e+01
Information Content per bp:1.817
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets60.0 +/- 19.7bp
Average Position of motif in Background46.0 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGACTCCCA
CTGTCTGTCACCT-
 A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGTCTGACTCCCA
TGTCTGDCACCT-
 A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGACTCCCA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGACTCCCA
TWGTCTGV------
 A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGACTCCCA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGTCTGACTCCCA----
TACGAGACTCCTCTAAC
 A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGACTCCCA
CTGTCTGG------
 A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGTCTGACTCCCA
----TGACTCA--
 A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGACTCCCA
VBSYGTCTGG------
 A C G T A C G T A C G T A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

FOSL1/MA0477.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGTCTGACTCCCA
--NATGAGTCACC
 A C G T A C T G G C A T A T G C A C G T A C T G C G T A G T A C A C G T A G T C A G T C A G T C C T G A
A C G T A C G T A T G C T G C A A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G A T C