Information for 5-CCGKGTTTGSYAGGGC (Motif 13)

G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C
Reverse Opposite:
A C T G A T G C A G T C G T A C C G A T C T A G A T G C A G T C G T C A C G T A C T G A A G T C G T A C A T G C T C A G A C T G
p-value:1e-9
log p-value:-2.137e+01
Information Content per bp:1.757
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.6 +/- 16.1bp
Average Position of motif in Background54.5 +/- 8.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCGKGTTTGSYAGGGC
-GGGGCTYGKCTGGGA
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C
A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGKGTTTGSYAGGGC-
-NNTGTTTATTTTGGCA
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T
A C G T C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGKGTTTGSYAGGGC-
--NNCGTTGCTATGGNN
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T
A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:4
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCGKGTTTGSYAGGGC---
-----GTTGCCATGGNAAC
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCGKGTTTGSYAGGGC--
----GGTTGCCATGGCAA
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCGKGTTTGSYAGGGC--
----NGTTGCCATGGCAA
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CCGKGTTTGSYAGGGC
------TTGCCAAG--
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CCGKGTTTGSYAGGGC
---CTGTTGCTAGGS-
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C
A C G T A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CCGKGTTTGSYAGGGC-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CCGKGTTTGSYAGGGC
-TGGGTGTGGC-----
 G T A C A G T C A T C G A C T G A C T G A G C T A C G T A C G T A C T G A T C G A G T C C G T A A C T G A C T G A T C G G T A C
A C G T C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T A C G T