Information for 8-ATTCAACGAG (Motif 10)

C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C T A G A C G T A C G T A C T G C G T A C G T A C G A T
p-value:1e-10
log p-value:-2.392e+01
Information Content per bp:1.921
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.49%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets50.5 +/- 21.7bp
Average Position of motif in Background57.4 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:ATTCAACGAG-
NTTTTACGAGN
 C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ATTCAACGAG----
ANATTTTACGAGNNNN
 A C G T A C G T C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATTCAACGAG----
NAATTTTACGAGNTNN
 A C G T A C G T C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0005.1_Bbx_1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--ATTCAACGAG---
TAATTCAATGAAGTG
 A C G T A C G T C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T A C G T A C G T
G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PB0068.1_Sox1_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATTCAACGAG-
AATCAATTCAATAATT
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T
G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATTCAACGAG------
-TTGACCGAGAATTCC
 C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Hoxa11/MA0911.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ATTCAACGAG-
ANTTTTACGACC
 A C G T C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATTCAACGAG
NTTTTACGAC
 C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATTCAACGAG
ATTAAA----
 C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATTCAACGAG-
NTTTTACGACC
 C G T A A C G T A C G T G T A C C G T A C G T A G A T C A C T G C G T A A C T G A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C