p-value: | 1e-9 |
log p-value: | -2.227e+01 |
Information Content per bp: | 1.689 |
Number of Target Sequences with motif | 12.0 |
Percentage of Target Sequences with motif | 1.38% |
Number of Background Sequences with motif | 49.5 |
Percentage of Background Sequences with motif | 0.10% |
Average Position of motif in Targets | 57.5 +/- 27.1bp |
Average Position of motif in Background | 47.0 +/- 27.3bp |
Strand Bias (log2 ratio + to - strand density) | 0.5 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
PH0112.1_Nkx2-3/Jaspar
Match Rank: | 1 |
Score: | 0.62 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----AAGTACCWAAGCT CNTTAAGTACTTAANG- |
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PH0117.1_Nkx3-1/Jaspar
Match Rank: | 2 |
Score: | 0.62 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----AAGTACCWAAGCT TACTAAGTACTTAAATG |
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PH0116.1_Nkx2-9/Jaspar
Match Rank: | 3 |
Score: | 0.57 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----AAGTACCWAAGCT TTTTAAGTACTTAAATT |
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Nr2e3/MA0164.1/Jaspar
Match Rank: | 4 |
Score: | 0.57 |
Offset: | 7 |
Orientation: | forward strand |
Alignment: | AAGTACCWAAGCT- -------CAAGCTT |
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PH0053.1_Hoxa6/Jaspar
Match Rank: | 5 |
Score: | 0.55 |
Offset: | -5 |
Orientation: | forward strand |
Alignment: | -----AAGTACCWAAGCT AAGGTAATTACCTAAT-- |
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Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer
Match Rank: | 6 |
Score: | 0.53 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | AAGTACCWAAGCT AAGCACTTAA--- |
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Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer
Match Rank: | 7 |
Score: | 0.53 |
Offset: | -1 |
Orientation: | reverse strand |
Alignment: | -AAGTACCWAAGCT------ GAAGTANCACGAATNMRAGT |
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PH0103.1_Meox1/Jaspar
Match Rank: | 8 |
Score: | 0.51 |
Offset: | -5 |
Orientation: | forward strand |
Alignment: | -----AAGTACCWAAGCT GAGGTAATTACCTCAG-- |
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Rarb/MA0857.1/Jaspar
Match Rank: | 9 |
Score: | 0.50 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -AAGTACCWAAGCT-- AAAGGTCAAAAGGTCA |
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CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer
Match Rank: | 10 |
Score: | 0.50 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | AAGTACCWAAGCT -----GCTAATCC |
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