Information for 24-CATCCATTCA (Motif 23)

G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A
Reverse Opposite:
C G A T A T C G G C T A T C G A C G A T T A C G T A C G G T C A C G A T C A T G
p-value:1e-13
log p-value:-3.218e+01
Information Content per bp:1.649
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets64.9 +/- 27.6bp
Average Position of motif in Background57.6 +/- 36.8bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0028.1_Hbp1_1/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CATCCATTCA----
NNCATTCATTCATNNN
 A C G T A C G T G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CATCCATTCA--
-AGCCACTCAAG
 G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T A C G T
A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Dux/MA0611.1/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CATCCATTCA-
---CCAATCAA
 G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CATCCATTCA-------
---ACATTCATGACACG
 G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CATCCATTCA------
GACCACATTCATACAAT
 A C G T G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATCCATTCA
ACTAGCCAATCA
 A C G T A C G T G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CATCCATTCA-
-MRSCACTYAA
 G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATCCATTCA-
SCTGTCAVTCAV
 A C G T G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATCCATTCA-
-AASCACTCAA
 G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CATCCATTCA-
NCTGTCAATCAN
 A C G T G T A C G C T A A C G T A T G C A G T C G C T A A G C T C G A T T A G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A