Information for 1-GGAATTTCCC (Motif 1)

C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
Reverse Opposite:
C A T G T A C G C T A G C T G A C G T A C G T A C G A T A G C T A G T C G A T C
p-value:1e-123
log p-value:-2.834e+02
Information Content per bp:1.659
Number of Target Sequences with motif236.0
Percentage of Target Sequences with motif26.73%
Number of Background Sequences with motif1869.3
Percentage of Background Sequences with motif3.88%
Average Position of motif in Targets48.8 +/- 20.8bp
Average Position of motif in Background49.9 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTTCCC-
GGGAAATCCCCN
 A C G T C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GGAATTTCCC
GGAAATTCCC
 C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GGAATTTCCC
GGAAATTCCC
 C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GGAATTTCCC
GGAAATCCCC
 C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:GGAATTTCCC
GGAAANCCCC
 C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GGAATTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C A C G T
T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-GGAATTTCCC-
GGGGATTCCCCC
 A C G T C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GGAATTTCCC-
AGGGGATTCCCCT
 A C G T A C G T C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C A C G T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GGAATTTCCC
NCTGGAATGC---
 A C G T A C G T A C G T C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C
G A T C G T A C C G A T A C T G A C T G C G T A C G T A A C G T A C T G G A T C A C G T A C G T A C G T

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GGAATTTCCC--
--ATTTTCCATT
 C T A G C T A G T C G A G C T A G C A T G C A T G A C T A G T C A G T C G T A C A C G T A C G T
A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T