Information for 11-GGTTGCCATG (Motif 18)

A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G
Reverse Opposite:
A G T C C G T A C G A T C T A G A C T G A G T C C G T A C G T A A G T C A G T C
p-value:1e-8
log p-value:-1.952e+01
Information Content per bp:1.925
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.45%
Number of Background Sequences with motif73.2
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets51.9 +/- 23.8bp
Average Position of motif in Background54.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATG---
NNCGTTGCTATGGNN
 A C G T A C G T A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATG----
GGTTGCCATGGCAA
 A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATG-----
-GTTGCCATGGNAAC
 A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATG----
NGTTGCCATGGCAA
 A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCCATG-
CTGTTGCTAGGS
 A C G T A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATG---
NCCGTTGCTANGNGN
 A C G T A C G T A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATG-----
CGGTTGCCATGGCAAC
 A C G T A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------GGTTGCCATG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATG-----
KGTTGCCATGGCAAC
 A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATG------
CGTTGCCATGGCAACG
 A C T G A C T G A C G T A C G T A C T G A G T C A G T C G C T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G