Information for 5-RAGTGCYBSY (Motif 8)

C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
Reverse Opposite:
C T A G T A C G T C G A C T G A T C A G G A T C C G T A A G T C A G C T G A C T
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.563
Number of Target Sequences with motif67.0
Percentage of Target Sequences with motif8.05%
Number of Background Sequences with motif1345.9
Percentage of Background Sequences with motif2.83%
Average Position of motif in Targets46.1 +/- 27.2bp
Average Position of motif in Background50.8 +/- 29.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGCYBSY
TTAAGTGCTT--
 A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--RAGTGCYBSY
TTRAGTGSYK--
 A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGCYBSY
CTYRAGTGSY---
 A C G T A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGCYBSY
TTGAGTGSTT--
 A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:5
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGCYBSY
NTCAAGTGG----
 A C G T A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T

ISL2/MA0914.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGCYBSY
TTAAGTGC----
 A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---RAGTGCYBSY
NTCAAGTGGN---
 A C G T A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:8
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RAGTGCYBSY
TTAAGTGGN---
 A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---RAGTGCYBSY
BTBRAGTGSN---
 A C G T A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:10
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----RAGTGCYBSY---
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A C G T C T G A C T G A T C A G G C A T C T A G A G T C G A C T A G C T A T G C G A T C A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T