Information for 3-AGCCACTTCA (Motif 5)

C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A
Reverse Opposite:
A C G T A T C G C T G A C G T A A C T G G C A T C T A G A C T G A G T C G A C T
p-value:1e-14
log p-value:-3.233e+01
Information Content per bp:1.686
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif7.93%
Number of Background Sequences with motif1257.9
Percentage of Background Sequences with motif2.65%
Average Position of motif in Targets54.7 +/- 26.9bp
Average Position of motif in Background50.5 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0113.1_Nkx2-4/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTCA----
TAAGCCACTTGAAATT
 A C G T A C G T C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T A C G T A C G T A C G T
G C A T C G T A C G T A C T A G T A G C G A T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G C T A G C A T G A C T

PH0171.1_Nkx2-1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTCA----
TAAGCCACTTGAAATT
 A C G T A C G T C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTCA----
TAAGCCACTTGAATTT
 A C G T A C G T C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTCA----
TAAGCCACTTAACATT
 A C G T A C G T C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T A C G T A C G T A C G T
C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:AGCCACTTCA-
-NSCACTYVAV
 C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T
A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.79
Offset:2
Orientation:forward strand
Alignment:AGCCACTTCA-
--CCACTTGAA
 C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T
A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGCCACTTCA-----
ATAACCACTTGAAAATT
 A C G T A C G T C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AGCCACTTCA-
-RSCACTYRAG
 C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T
A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:AGCCACTTCA
AASCACTCAA
 C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.77
Offset:1
Orientation:forward strand
Alignment:AGCCACTTCA-
-ACCACTTGAA
 C T G A T C A G T G A C G A T C C G T A T G A C A C G T G A C T T A G C C G T A A C G T
A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A