Information for 1-GACTGCACAGACWGTC (Motif 3)

C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
Reverse Opposite:
A C T G G T C A G T A C C G A T A C T G A C G T A T G C A C G T C T A G A C G T A C T G A G T C C G T A A C T G A C G T A G T C
p-value:1e-16
log p-value:-3.749e+01
Information Content per bp:1.793
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.0 +/- 22.7bp
Average Position of motif in Background37.9 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GACTGCACAGACWGTC
AGCGGCACACACGCAA
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GACTGCACAGACWGTC-
--VAGRACAKNCTGTBC
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C A C G T
A C G T A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GACTGCACAGACWGTC--
--NAGNACANNNTGTNCT
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GACTGCACAGACWGTC--
--NAGAACAGNCTGTNCT
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GACTGCACAGACWGTC---
----GRACAGWMTGTYCTB
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GACTGCACAGACWGTC
CGAAGCACACAAAATA
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GACTGCACAGACWGTC
---TGCCCAGNHW---
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GACTGCACAGACWGTC
CAGATGTGCACATACGT--
 A C G T A C G T A C G T C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GACTGCACAGACWGTC
TACATGTGCACATAAAA--
 A C G T A C G T A C G T C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GACTGCACAGACWGTC
------CCAGACRSVB
 C T A G G T C A T A G C C G A T A C T G A G T C C G T A A G T C C G T A A T C G G T C A G T A C C G A T A C T G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C