Information for 6-GAAGGTGACCGCC (Motif 11)

A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
Reverse Opposite:
A C T G A C T G A G T C A C T G A C T G A G C T A T G C C G T A A G T C A G T C A C G T C G A T G T A C
p-value:1e-10
log p-value:-2.454e+01
Information Content per bp:1.780
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif23.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets59.3 +/- 32.0bp
Average Position of motif in Background49.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GAAGGTGACCGCC--
--AGGTGNCAGACAG
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C A C G T A C G T
A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GAAGGTGACCGCC
-AAGGTCAC----
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAAGGTGACCGCC-
--AGGTGHCAGACA
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C A C G T
A C G T A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGTGACCGCC
TCAAGGTCAN----
 A C G T A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAAGGTGACCGCC
CAAGATGGCGGC-
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAAGGTGACCGCC
TCAAGGTCAT----
 A C G T A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAAGGTGACCGCC
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAGGTGACCGCC
CAAGATGGCGGC-
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAAGGTGACCGCC
CAAGGHCANV---
 A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GAAGGTGACCGCC
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C T G C T A G C G A T A T C G C T G A A G T C G T A C A C T G G T A C G T A C
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A