Information for 11-GAGAATTTTTTSCSTC (Motif 11)

C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
Reverse Opposite:
T C A G G C T A T A C G A C T G T A G C C G T A T C G A C G T A T C G A C T G A C G T A A C G T A C G T A G T C A C G T G T A C
p-value:1e-10
log p-value:-2.416e+01
Information Content per bp:1.706
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets23.0 +/- 15.7bp
Average Position of motif in Background50.9 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GAGAATTTTTTSCSTC
TTGACCGAGAATTCC-------
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GAGAATTTTTTSCSTC-
---TTTTTTTTCNNGTN
 C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C A C G T
A C G T A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGAATTTTTTSCSTC-
-NGANTTTTATGGCTCN
 C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C A C G T
A C G T G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PB0175.1_Sox4_2/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAATTTTTTSCSTC
TNCNNAACAATTTTTNC----
 A C G T A C G T A C G T A C G T A C G T C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C A C G T A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAATTTTTTSCSTC
NNCNNAACAATTNT-------
 A C G T A C G T A C G T A C G T A C G T C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GAGAATTTTTTSCSTC
GNNACCGAGAATNNN-------
 A C G T A C G T A C G T A C G T A C G T A C G T C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGAATTTTTTSCSTC-
-NNANTTTTATTGGNNN
 C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C A C G T
A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:GAGAATTTTTTSCSTC
-----TTTTATGGCTN
 C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GAGAATTTTTTSCSTC
----NTTTTATGAC--
 C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
A C G T A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GAGAATTTTTTSCSTC
CCTTGCAATTTTTNN---
 A C G T A C G T C A T G C G T A A C T G G T C A T G C A A C G T A G C T A G C T G C A T A C G T A C G T A T C G T A G C A T G C C A G T A G T C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T A C G T A C G T