Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 853)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48367)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-112	-2.596e+02	0.0000	109.0	12.78%	237.0	0.49%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-100	-2.319e+02	0.0000	168.0	19.70%	1087.3	2.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-97	-2.250e+02	0.0000	175.0	20.52%	1262.3	2.63%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-97	-2.241e+02	0.0000	177.0	20.75%	1306.3	2.73%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-95	-2.193e+02	0.0000	162.0	18.99%	1076.0	2.25%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-93	-2.154e+02	0.0000	152.0	17.82%	937.6	1.96%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-91	-2.104e+02	0.0000	181.0	21.22%	1504.0	3.14%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-84	-1.956e+02	0.0000	124.0	14.54%	634.9	1.32%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-77	-1.775e+02	0.0000	104.0	12.19%	459.5	0.96%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-74	-1.707e+02	0.0000	99.0	11.61%	428.6	0.89%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-40	-9.240e+01	0.0000	62.0	7.27%	344.7	0.72%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-28	-6.630e+01	0.0000	114.0	13.36%	1878.3	3.92%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-27	-6.282e+01	0.0000	97.0	11.37%	1459.0	3.04%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-24	-5.728e+01	0.0000	98.0	11.49%	1604.7	3.35%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-23	-5.327e+01	0.0000	88.0	10.32%	1399.3	2.92%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-22	-5.185e+01	0.0000	50.0	5.86%	466.7	0.97%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-19	-4.567e+01	0.0000	22.0	2.58%	68.9	0.14%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-18	-4.280e+01	0.0000	23.0	2.70%	89.5	0.19%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-16	-3.853e+01	0.0000	20.0	2.34%	73.2	0.15%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-16	-3.766e+01	0.0000	87.0	10.20%	1765.9	3.68%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-15	-3.633e+01	0.0000	89.0	10.43%	1874.4	3.91%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-13	-3.122e+01	0.0000	65.0	7.62%	1234.3	2.58%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-12	-2.874e+01	0.0000	79.0	9.26%	1784.0	3.72%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-12	-2.806e+01	0.0000	67.0	7.85%	1393.3	2.91%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-11	-2.698e+01	0.0000	58.0	6.80%	1129.7	2.36%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-11	-2.650e+01	0.0000	63.0	7.39%	1308.1	2.73%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-11	-2.546e+01	0.0000	41.0	4.81%	649.7	1.36%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-10	-2.469e+01	0.0000	54.0	6.33%	1066.4	2.22%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-10	-2.414e+01	0.0000	59.0	6.92%	1249.2	2.61%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-10	-2.365e+01	0.0000	30.0	3.52%	388.3	0.81%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-9	-2.229e+01	0.0000	55.0	6.45%	1174.3	2.45%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-9	-2.083e+01	0.0000	122.0	14.30%	3880.1	8.10%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-8	-1.897e+01	0.0000	43.0	5.04%	878.9	1.83%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-7	-1.753e+01	0.0000	93.0	10.90%	2858.6	5.96%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-7	-1.732e+01	0.0000	85.0	9.96%	2538.5	5.30%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-7	-1.718e+01	0.0000	62.0	7.27%	1628.7	3.40%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-7	-1.706e+01	0.0000	41.0	4.81%	873.0	1.82%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-7	-1.644e+01	0.0000	73.0	8.56%	2098.8	4.38%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-6	-1.593e+01	0.0000	40.0	4.69%	876.7	1.83%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-6	-1.584e+01	0.0000	60.0	7.03%	1615.7	3.37%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-6	-1.531e+01	0.0000	92.0	10.79%	2961.4	6.18%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-6	-1.471e+01	0.0000	16.0	1.88%	186.6	0.39%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-6	-1.419e+01	0.0000	138.0	16.18%	5124.4	10.69%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-6	-1.386e+01	0.0000	61.0	7.15%	1757.5	3.67%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-5	-1.349e+01	0.0000	52.0	6.10%	1420.6	2.96%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-5	-1.326e+01	0.0000	99.0	11.61%	3420.8	7.14%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.307e+01	0.0000	63.0	7.39%	1884.7	3.93%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.306e+01	0.0000	45.0	5.28%	1171.9	2.45%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-5	-1.272e+01	0.0000	70.0	8.21%	2198.0	4.59%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-5	-1.269e+01	0.0000	102.0	11.96%	3602.8	7.52%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.250e+01	0.0000	31.0	3.63%	685.8	1.43%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-5	-1.201e+01	0.0000	35.0	4.10%	845.1	1.76%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.195e+01	0.0000	51.0	5.98%	1461.9	3.05%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-1.143e+01	0.0001	9.0	1.06%	75.5	0.16%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-1.136e+01	0.0001	38.0	4.45%	984.3	2.05%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-4	-1.111e+01	0.0001	29.0	3.40%	665.7	1.39%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-4	-1.076e+01	0.0001	50.0	5.86%	1488.6	3.11%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-1.070e+01	0.0001	25.0	2.93%	541.7	1.13%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.025e+01	0.0002	46.0	5.39%	1355.3	2.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-4	-9.848e+00	0.0003	12.0	1.41%	164.6	0.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-9.580e+00	0.0004	51.0	5.98%	1603.7	3.35%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-4	-9.572e+00	0.0004	45.0	5.28%	1354.1	2.83%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-4	-9.284e+00	0.0005	81.0	9.50%	2949.5	6.15%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-3	-9.179e+00	0.0006	20.0	2.34%	422.3	0.88%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-9.105e+00	0.0006	43.0	5.04%	1300.1	2.71%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-9.023e+00	0.0007	101.0	11.84%	3907.0	8.15%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-3	-8.812e+00	0.0008	30.0	3.52%	799.0	1.67%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-3	-8.765e+00	0.0008	38.0	4.45%	1116.1	2.33%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-3	-8.499e+00	0.0011	66.0	7.74%	2339.6	4.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-3	-8.212e+00	0.0014	18.0	2.11%	386.2	0.81%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-8.176e+00	0.0014	47.0	5.51%	1529.5	3.19%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-3	-8.123e+00	0.0015	23.0	2.70%	566.2	1.18%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-3	-7.971e+00	0.0017	37.0	4.34%	1122.3	2.34%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-7.364e+00	0.0031	11.0	1.29%	186.0	0.39%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.133e+00	0.0039	51.0	5.98%	1784.1	3.72%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.786e+00	0.0054	11.0	1.29%	200.0	0.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.592e+00	0.0065	62.0	7.27%	2334.6	4.87%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-6.480e+00	0.0072	74.0	8.68%	2909.0	6.07%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-6.431e+00	0.0074	34.0	3.99%	1096.9	2.29%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.421e+00	0.0074	32.0	3.75%	1012.4	2.11%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-6.370e+00	0.0077	52.0	6.10%	1896.4	3.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-6.320e+00	0.0080	117.0	13.72%	5029.3	10.49%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-6.233e+00	0.0086	224.0	26.26%	10560.7	22.03%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-2	-6.178e+00	0.0090	52.0	6.10%	1914.3	3.99%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-5.874e+00	0.0120	39.0	4.57%	1355.3	2.83%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.868e+00	0.0120	44.0	5.16%	1579.6	3.30%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.837e+00	0.0122	94.0	11.02%	3959.5	8.26%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.632e+00	0.0148	16.0	1.88%	412.5	0.86%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-5.598e+00	0.0152	43.0	5.04%	1558.8	3.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-2	-5.345e+00	0.0193	71.0	8.32%	2902.2	6.06%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-5.107e+00	0.0242	7.0	0.82%	119.5	0.25%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-4.942e+00	0.0282	25.0	2.93%	815.1	1.70%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-4.739e+00	0.0342	37.0	4.34%	1364.6	2.85%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-2	-4.712e+00	0.0348	67.0	7.85%	2791.9	5.83%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-4.709e+00	0.0348	10.0	1.17%	229.7	0.48%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.628e+00	0.0371	6.0	0.70%	101.0	0.21%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-4.426e+00	0.0449	15.0	1.76%	431.7	0.90%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-4.253e+00	0.0528	3.0	0.35%	28.6	0.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.241e+00	0.0529	77.0	9.03%	3354.3	7.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.178e+00	0.0558	7.0	0.82%	143.0	0.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-4.171e+00	0.0558	35.0	4.10%	1327.5	2.77%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.162e+00	0.0558	6.0	0.70%	111.9	0.23%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.123e+00	0.0573	78.0	9.14%	3423.3	7.14%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.044e+00	0.0613	19.0	2.23%	620.0	1.29%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-3.924e+00	0.0685	15.0	1.76%	459.2	0.96%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.893e+00	0.0700	42.0	4.92%	1687.9	3.52%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.864e+00	0.0714	140.0	16.41%	6663.6	13.90%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.864e+00	0.0714	40.0	4.69%	1596.0	3.33%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.861e+00	0.0714	11.0	1.29%	301.4	0.63%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.859e+00	0.0714	17.0	1.99%	547.4	1.14%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.749e+00	0.0772	27.0	3.17%	999.6	2.09%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-3.623e+00	0.0868	5.0	0.59%	93.0	0.19%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.568e+00	0.0909	22.0	2.58%	788.1	1.64%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.414e+00	0.1051	69.0	8.09%	3089.6	6.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.393e+00	0.1064	71.0	8.32%	3194.0	6.66%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.388e+00	0.1064	32.0	3.75%	1269.4	2.65%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-1	-3.358e+00	0.1083	5.0	0.59%	100.6	0.21%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-3.356e+00	0.1083	53.0	6.21%	2296.3	4.79%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.246e+00	0.1190	6.0	0.70%	139.0	0.29%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-3.232e+00	0.1197	36.0	4.22%	1479.7	3.09%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.227e+00	0.1197	30.0	3.52%	1192.1	2.49%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-3.220e+00	0.1197	9.0	1.06%	253.1	0.53%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.138e+00	0.1284	42.0	4.92%	1784.2	3.72%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-3.080e+00	0.1349	196.0	22.98%	9857.8	20.57%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.046e+00	0.1385	42.0	4.92%	1797.7	3.75%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.026e+00	0.1401	17.0	1.99%	608.4	1.27%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-3.023e+00	0.1401	19.0	2.23%	699.0	1.46%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.952e+00	0.1486	4.0	0.47%	78.7	0.16%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.951e+00	0.1486	88.0	10.32%	4155.9	8.67%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.912e+00	0.1522	31.0	3.63%	1277.5	2.67%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.900e+00	0.1529	10.0	1.17%	311.6	0.65%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.892e+00	0.1530	15.0	1.76%	529.6	1.11%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-2.856e+00	0.1573	52.0	6.10%	2326.6	4.85%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.788e+00	0.1673	20.0	2.34%	767.2	1.60%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-2.728e+00	0.1762	7.0	0.82%	197.6	0.41%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-2.723e+00	0.1762	31.0	3.63%	1301.7	2.72%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.719e+00	0.1762	22.0	2.58%	868.7	1.81%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.711e+00	0.1762	17.0	1.99%	635.9	1.33%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.673e+00	0.1807	34.0	3.99%	1455.8	3.04%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.590e+00	0.1950	44.0	5.16%	1967.3	4.10%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.590e+00	0.1950	8.0	0.94%	245.8	0.51%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.589e+00	0.1950	11.0	1.29%	374.9	0.78%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.583e+00	0.1950	37.0	4.34%	1617.7	3.38%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.582e+00	0.1950	6.0	0.70%	164.6	0.34%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.563e+00	0.1950	10.0	1.17%	332.7	0.69%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-2.537e+00	0.1972	2.0	0.23%	26.2	0.05%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.523e+00	0.1987	20.0	2.34%	794.7	1.66%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.421e+00	0.2185	59.0	6.92%	2765.9	5.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.393e+00	0.2231	14.0	1.64%	525.7	1.10%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.385e+00	0.2235	12.0	1.41%	434.3	0.91%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.376e+00	0.2240	69.0	8.09%	3294.7	6.87%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1	-2.369e+00	0.2240	93.0	10.90%	4557.9	9.51%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.341e+00	0.2289	43.0	5.04%	1959.7	4.09%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-1	-2.341e+00	0.2289	153.0	17.94%	7776.9	16.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.340e+00	0.2289	20.0	2.34%	814.4	1.70%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.317e+00	0.2300	21.0	2.46%	866.0	1.81%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.296e+00	0.2333	2.0	0.23%	30.7	0.06%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.234e+00	0.2466	16.0	1.88%	634.4	1.32%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.151e+00	0.2649	15.0	1.76%	595.5	1.24%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.151e+00	0.2649	15.0	1.76%	595.4	1.24%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.147e+00	0.2649	4.0	0.47%	104.3	0.22%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.090e+00	0.2778	27.0	3.17%	1191.8	2.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.021e+00	0.2960	30.0	3.52%	1353.1	2.82%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.017e+00	0.2960	29.0	3.40%	1303.8	2.72%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.939e+00	0.3172	10.0	1.17%	379.2	0.79%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.910e+00	0.3246	1.0	0.12%	9.4	0.02%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.898e+00	0.3266	65.0	7.62%	3199.8	6.68%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.840e+00	0.3442	14.0	1.64%	580.9	1.21%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.837e+00	0.3442	36.0	4.22%	1693.9	3.53%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.783e+00	0.3598	161.0	18.87%	8418.9	17.57%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.752e+00	0.3692	22.0	2.58%	990.6	2.07%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.744e+00	0.3701	6.0	0.70%	210.6	0.44%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.716e+00	0.3783	5.0	0.59%	167.5	0.35%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.641e+00	0.4055	18.0	2.11%	804.5	1.68%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.615e+00	0.4137	36.0	4.22%	1738.8	3.63%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.587e+00	0.4232	74.0	8.68%	3769.0	7.86%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.567e+00	0.4292	37.0	4.34%	1802.0	3.76%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.563e+00	0.4292	7.0	0.82%	270.1	0.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.562e+00	0.4292	6.0	0.70%	223.9	0.47%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.538e+00	0.4342	65.0	7.62%	3299.8	6.88%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.498e+00	0.4497	6.0	0.70%	228.8	0.48%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.477e+00	0.4565	13.0	1.52%	574.7	1.20%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.410e+00	0.4854	41.0	4.81%	2050.2	4.28%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.403e+00	0.4864	30.0	3.52%	1468.2	3.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.399e+00	0.4864	23.0	2.70%	1101.1	2.30%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.394e+00	0.4864	4.0	0.47%	142.2	0.30%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.385e+00	0.4873	8.0	0.94%	335.6	0.70%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.355e+00	0.4996	22.0	2.58%	1057.6	2.21%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.354e+00	0.4996	9.0	1.06%	389.0	0.81%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.301e+00	0.5218	31.0	3.63%	1544.0	3.22%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.287e+00	0.5262	2.0	0.23%	58.3	0.12%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.262e+00	0.5365	234.0	27.43%	12707.3	26.51%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.262e+00	0.5365	3.0	0.35%	104.9	0.22%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.239e+00	0.5436	17.0	1.99%	817.0	1.70%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.221e+00	0.5504	4.0	0.47%	154.7	0.32%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.177e+00	0.5726	20.0	2.34%	986.8	2.06%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.163e+00	0.5777	6.0	0.70%	258.2	0.54%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.131e+00	0.5930	4.0	0.47%	161.4	0.34%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.118e+00	0.5978	5.0	0.59%	212.7	0.44%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.094e+00	0.6098	79.0	9.26%	4219.2	8.80%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.069e+00	0.6215	21.0	2.46%	1062.9	2.22%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.059e+00	0.6248	6.0	0.70%	269.3	0.56%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.055e+00	0.6248	26.0	3.05%	1335.2	2.79%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.053e+00	0.6248	50.0	5.86%	2643.1	5.51%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.031e+00	0.6335	12.0	1.41%	589.0	1.23%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.938e-01	0.6541	17.0	1.99%	863.8	1.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.784e-01	0.6610	91.0	10.67%	4934.7	10.30%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.697e-01	0.6636	21.0	2.46%	1085.7	2.27%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.611e-01	0.6662	5.0	0.59%	228.6	0.48%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.341e-01	0.6811	30.0	3.52%	1586.1	3.31%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-9.308e-01	0.6811	99.0	11.61%	5402.0	11.27%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.993e-01	0.6985	5.0	0.59%	235.2	0.49%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-8.964e-01	0.6985	46.0	5.39%	2480.6	5.18%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-8.841e-01	0.7026	26.0	3.05%	1381.3	2.88%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.824e-01	0.7026	1.0	0.12%	30.7	0.06%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.729e-01	0.7040	46.0	5.39%	2489.5	5.19%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-8.674e-01	0.7046	33.0	3.87%	1772.9	3.70%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.632e-01	0.7046	3.0	0.35%	134.0	0.28%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.382e-01	0.7188	67.0	7.85%	3670.0	7.66%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.374e-01	0.7188	30.0	3.52%	1616.6	3.37%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.360e-01	0.7188	12.0	1.41%	624.4	1.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.231e-01	0.7199	92.0	10.79%	5071.7	10.58%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.229e-01	0.7199	7.0	0.82%	353.6	0.74%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.172e-01	0.7199	4.0	0.47%	191.8	0.40%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.124e-01	0.7199	25.0	2.93%	1347.9	2.81%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.055e-01	0.7199	31.0	3.63%	1682.6	3.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.911e-01	0.7269	4.0	0.47%	194.3	0.41%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.729e-01	0.7370	16.0	1.88%	859.2	1.79%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.558e-01	0.7465	17.0	1.99%	919.6	1.92%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.487e-01	0.7485	30.0	3.52%	1646.1	3.43%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.452e-01	0.7485	8.0	0.94%	421.6	0.88%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.439e-01	0.7485	28.0	3.28%	1536.2	3.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.428e-01	0.7485	9.0	1.06%	477.4	1.00%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.321e-01	0.7485	29.0	3.40%	1596.9	3.33%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.288e-01	0.7485	1.0	0.12%	37.7	0.08%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-7.246e-01	0.7485	22.0	2.58%	1207.0	2.52%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.997e-01	0.7629	14.0	1.64%	766.7	1.60%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.853e-01	0.7707	11.0	1.29%	601.8	1.26%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.781e-01	0.7730	38.0	4.45%	2122.3	4.43%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.715e-01	0.7750	8.0	0.94%	435.0	0.91%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.584e-01	0.7819	4.0	0.47%	211.2	0.44%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.576e-01	0.7819	1.0	0.12%	41.3	0.09%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.443e-01	0.7864	4.0	0.47%	213.7	0.45%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.328e-01	0.7923	38.0	4.45%	2143.0	4.47%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.254e-01	0.7949	76.0	8.91%	4291.7	8.95%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.192e-01	0.7966	168.0	19.70%	9481.0	19.78%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.089e-01	0.8016	8.0	0.94%	448.0	0.93%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-5.851e-01	0.8176	12.0	1.41%	683.5	1.43%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.757e-01	0.8220	37.0	4.34%	2112.5	4.41%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.733e-01	0.8220	52.0	6.10%	2965.0	6.19%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.672e-01	0.8224	12.0	1.41%	688.1	1.44%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.537e-01	0.8303	4.0	0.47%	227.0	0.47%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.528e-01	0.8303	76.0	8.91%	4339.6	9.05%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.427e-01	0.8328	101.0	11.84%	5763.9	12.03%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-5.424e-01	0.8328	23.0	2.70%	1328.7	2.77%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.302e-01	0.8367	4.0	0.47%	232.0	0.48%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.077e-01	0.8525	4.0	0.47%	235.9	0.49%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.921e-01	0.8625	63.0	7.39%	3642.3	7.60%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.817e-01	0.8682	1.0	0.12%	54.2	0.11%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-4.651e-01	0.8793	39.0	4.57%	2285.8	4.77%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.641e-01	0.8793	3.0	0.35%	182.3	0.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.410e-01	0.8939	7.0	0.82%	430.4	0.90%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.306e-01	0.8998	8.0	0.94%	493.6	1.03%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.215e-01	0.9046	2.0	0.23%	126.7	0.26%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.093e-01	0.9122	3.0	0.35%	192.3	0.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.042e-01	0.9134	3.0	0.35%	193.1	0.40%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-3.994e-01	0.9144	4.0	0.47%	258.0	0.54%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-3.989e-01	0.9144	59.0	6.92%	3482.7	7.27%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.971e-01	0.9144	11.0	1.29%	684.3	1.43%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.878e-01	0.9148	32.0	3.75%	1926.7	4.02%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.791e-01	0.9194	7.0	0.82%	448.3	0.94%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-3.732e-01	0.9214	9.0	1.06%	572.4	1.19%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.676e-01	0.9232	9.0	1.06%	574.3	1.20%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.676e-01	0.9232	8.0	0.94%	514.0	1.07%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.600e-01	0.9235	14.0	1.64%	879.1	1.83%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.557e-01	0.9241	11.0	1.29%	700.9	1.46%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.503e-01	0.9257	8.0	0.94%	519.4	1.08%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.462e-01	0.9262	1.0	0.12%	69.4	0.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.280e-01	0.9398	5.0	0.59%	339.2	0.71%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.264e-01	0.9398	3.0	0.35%	210.8	0.44%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-3.053e-01	0.9546	45.0	5.28%	2747.1	5.73%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.883e-01	0.9675	2.0	0.23%	151.7	0.32%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.858e-01	0.9675	56.0	6.57%	3409.3	7.11%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.804e-01	0.9683	23.0	2.70%	1464.6	3.06%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.790e-01	0.9683	31.0	3.63%	1943.4	4.05%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.771e-01	0.9683	32.0	3.75%	2004.3	4.18%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.708e-01	0.9683	66.0	7.74%	4009.3	8.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.707e-01	0.9683	6.0	0.70%	423.1	0.88%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.704e-01	0.9683	23.0	2.70%	1471.6	3.07%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.641e-01	0.9683	1.0	0.12%	82.9	0.17%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.457e-01	0.9784	42.0	4.92%	2626.2	5.48%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.447e-01	0.9784	19.0	2.23%	1247.9	2.60%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.432e-01	0.9784	32.0	3.75%	2033.2	4.24%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.392e-01	0.9784	155.0	18.17%	9198.2	19.19%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.350e-01	0.9784	5.0	0.59%	372.5	0.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.325e-01	0.9784	9.0	1.06%	633.2	1.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.324e-01	0.9784	75.0	8.79%	4582.6	9.56%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.292e-01	0.9784	64.0	7.50%	3942.4	8.23%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.287e-01	0.9784	66.0	7.74%	4060.7	8.47%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.236e-01	0.9784	65.0	7.62%	4008.7	8.36%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.146e-01	0.9784	9.0	1.06%	643.3	1.34%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.117e-01	0.9784	19.0	2.23%	1272.1	2.65%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.117e-01	0.9784	1.0	0.12%	93.0	0.19%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.103e-01	0.9784	2.0	0.23%	172.5	0.36%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.030e-01	0.9784	8.0	0.94%	585.0	1.22%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.021e-01	0.9784	17.0	1.99%	1156.6	2.41%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.951e-01	0.9784	2.0	0.23%	177.9	0.37%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.935e-01	0.9784	4.0	0.47%	322.5	0.67%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.935e-01	0.9784	14.0	1.64%	975.2	2.03%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.917e-01	0.9784	1.0	0.12%	98.4	0.21%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.847e-01	0.9784	36.0	4.22%	2334.8	4.87%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.834e-01	0.9784	5.0	0.59%	396.5	0.83%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.821e-01	0.9784	16.0	1.88%	1110.3	2.32%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.567e-01	0.9911	5.0	0.59%	411.8	0.86%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.491e-01	0.9955	2.0	0.23%	195.8	0.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.465e-01	0.9955	13.0	1.52%	951.1	1.98%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.372e-01	1.0000	4.0	0.47%	352.7	0.74%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.338e-01	1.0000	6.0	0.70%	496.2	1.04%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.319e-01	1.0000	59.0	6.92%	3797.0	7.92%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.312e-01	1.0000	6.0	0.70%	498.0	1.04%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.305e-01	1.0000	25.0	2.93%	1729.5	3.61%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.273e-01	1.0000	9.0	1.06%	706.1	1.47%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.240e-01	1.0000	14.0	1.64%	1039.9	2.17%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.193e-01	1.0000	4.0	0.47%	364.2	0.76%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.095e-01	1.0000	6.0	0.70%	516.9	1.08%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.043e-01	1.0000	10.0	1.17%	797.7	1.66%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-9.881e-02	1.0000	68.0	7.97%	4411.5	9.20%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.103e-02	1.0000	1.0	0.12%	137.3	0.29%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.736e-02	1.0000	11.0	1.29%	886.7	1.85%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.623e-02	1.0000	37.0	4.34%	2554.9	5.33%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.504e-02	1.0000	116.0	13.60%	7306.0	15.24%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.435e-02	1.0000	2.0	0.23%	233.2	0.49%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.292e-02	1.0000	1.0	0.12%	142.1	0.30%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.292e-02	1.0000	1.0	0.12%	142.1	0.30%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-7.714e-02	1.0000	72.0	8.44%	4715.7	9.84%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-7.615e-02	1.0000	82.0	9.61%	5319.9	11.10%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.967e-02	1.0000	56.0	6.57%	3769.9	7.87%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.269e-02	1.0000	120.0	14.07%	7635.9	15.93%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.899e-02	1.0000	4.0	0.47%	423.3	0.88%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.786e-02	1.0000	2.0	0.23%	258.3	0.54%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.741e-02	1.0000	52.0	6.10%	3566.7	7.44%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.541e-02	1.0000	67.0	7.85%	4493.4	9.38%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.624e-02	1.0000	63.0	7.39%	4290.9	8.95%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.515e-02	1.0000	1.0	0.12%	176.0	0.37%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.373e-02	1.0000	75.0	8.79%	5036.5	10.51%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.274e-02	1.0000	1.0	0.12%	178.5	0.37%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.220e-02	1.0000	100.0	11.72%	6555.3	13.68%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.748e-02	1.0000	5.0	0.59%	540.0	1.13%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.496e-02	1.0000	8.0	0.94%	775.8	1.62%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.353e-02	1.0000	8.0	0.94%	814.0	1.70%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.115e-02	1.0000	51.0	5.98%	3819.2	7.97%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.567e-03	1.0000	60.0	7.03%	4463.9	9.31%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.372e-03	1.0000	7.0	0.82%	869.9	1.82%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	43.3	0.09%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	7.6	0.02%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	81.6	0.17%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	30.2	0.06%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	32.1	0.07%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	56.6	0.12%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	18.5	0.04%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.2	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	11.4	0.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	36.6	0.08%