Information for 6-AGCCAATSAS (Motif 5)

C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
Reverse Opposite:
T A G C A G C T A T C G C G T A A C G T A C G T A C T G A C T G A T G C A C G T
p-value:1e-15
log p-value:-3.468e+01
Information Content per bp:1.890
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.28%
Number of Background Sequences with motif212.2
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets53.9 +/- 20.8bp
Average Position of motif in Background50.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATSAS
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:AGCCAATSAS
AGCCAATCGG
 C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.86
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATSAS
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATSAS------
TGGACCAATCAGCACTCT
 A C G T A C G T C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AGCCAATSAS
--CCAATCAA
 C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:AGCCAATSAS
TGCCAA----
 C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATSAS-----
CGACCCAATCAACGGTG
 A C G T A C G T C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATSAS
CGTGCCAAG---
 A C G T A C G T C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGCCAATSAS-
-CCCAATTAGC
 C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

MSX2/MA0708.1/Jaspar

Match Rank:10
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AGCCAATSAS
--CCAATTAA
 C G T A A T C G A G T C A G T C C G T A C G T A A C G T A T G C T C G A A T C G
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A