Information for 6-CTGTGGCCTCCCCGCG (Motif 17)

A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
Reverse Opposite:
A T G C C A T G A T G C C T A G A T C G A T C G C A T G C T G A T C A G A C T G A G T C A G T C T G C A A T G C C G T A A T C G
p-value:1e-10
log p-value:-2.404e+01
Information Content per bp:1.680
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif54.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets39.2 +/- 20.6bp
Average Position of motif in Background52.4 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1/MA0002.2/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CTGTGGCCTCCCCGCG
GTCTGTGGTTT-------
 A C G T A C G T A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTGTGGCCTCCCCGCG
--GGGGATTCCCCC--
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCTCCCCGCG
-AGGGGATTCCCCT--
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCTCCCCGCG
-AGGGGAATCCCCT--
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CTGTGGCCTCCCCGCG
--GTGACGTCACCG--
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGTGGCCTCCCCGCG
-NGGGGATTTCCC---
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGGCCTCCCCGCG
NNHTGTGGTTWN------
 A C G T A C G T A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
C A T G C G A T G A C T A C G T A C T G A C G T A C T G A C T G A C G T A G C T C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:8
Score:0.52
Offset:8
Orientation:reverse strand
Alignment:CTGTGGCCTCCCCGCG
--------TCCCCA--
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T

PB0004.1_Atf1_1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTGTGGCCTCCCCGCG
ACGATGACGTCATCGA-
 A C G T A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
C G T A A G T C C A T G T C G A A G C T A C T G C G T A A G T C C T A G G C A T G T A C C T G A A G C T G T A C C T A G C T G A A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGTGGCCTCCCCGCG
CTGTGGTTTN------
 A T G C C G A T T A C G A C G T A C T G T C A G T A G C A G T C A G C T G A T C T A G C A T G C A G T C A T C G G T A C T A C G
G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T A C G T A C G T A C G T A C G T A C G T