Information for 4-TGTCCTCTGGNGCCCA (Motif 12)

A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
Reverse Opposite:
G A C T A C T G A C T G A T C G T A G C A T G C A G T C T A G C G T C A A T C G C G T A A C T G A C T G T C G A A G T C C G T A
p-value:1e-11
log p-value:-2.664e+01
Information Content per bp:1.791
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.2 +/- 27.7bp
Average Position of motif in Background46.9 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGTCCTCTGGNGCCCA
TGWCCTCARNTGACC-
 A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGTCCTCTGGNGCCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTCCTCTGGNGCCCA
TGACCTYA--------
 A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTCCTCTGGNGCCCA-
TGACCTTTCGTGACCTT
 A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A A C G T
A G C T C T A G C G T A T G A C G T A C A G C T A G C T A G C T T A G C C A T G A G C T A C T G T G C A G T A C T A G C A G C T G A C T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGTCCTCTGGNGCCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTCTGGNGCCCA
CTGACCTTTG-------
 A C G T A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGTCCTCTGGNGCCCA
NTGCCCANNGGTNA---
 A C G T A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGTCCTCTGGNGCCCA---
TGACCTAAAGTAACCTCTG
 A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A A C G T A C G T A C G T
A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGTCCTCTGGNGCCCA
ATGCCCTGAGGC-----
 A C G T A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGTCCTCTGGNGCCCA
TGACCYCT--------
 A C G T C T A G A G C T A G T C A G T C A C G T A T G C A C G T A C T G A C T G A T C G A C T G A T G C A G T C G T A C C T G A
A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T