Information for 7-CACACTSSCW (Motif 8)

A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
Reverse Opposite:
G C A T T C A G A T C G T A C G G C T A C T A G A G C T A T C G G C A T A C T G
p-value:1e-11
log p-value:-2.666e+01
Information Content per bp:1.660
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif12.02%
Number of Background Sequences with motif2605.5
Percentage of Background Sequences with motif5.68%
Average Position of motif in Targets54.2 +/- 26.0bp
Average Position of motif in Background49.9 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-CACACTSSCW
CCAGACRSVB-
 A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CACACTSSCW-
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CACACTSSCW
GGACACACCCCC-
 A C G T A C G T A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CACACTSSCW
CCAGACAG---
 A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACACTSSCW
TCAGTCTT---
 A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACACTSSCW
BCAGACWA---
 A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CACACTSSCW
ATGCCAGACN----
 A C G T A C G T A C G T A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CACACTSSCW-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CACACTSSCW
NWAACCACADNN---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T

MGA/MA0801.1/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACACTSSCW
TCACACCT---
 A C G T A G T C C G T A A T G C C T G A A G T C C G A T A T G C A T G C A G T C C G T A
G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T A C G T A C G T A C G T