Information for 2-TKTCTGTCACTGGCCT (Motif 6)

A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
Reverse Opposite:
T C G A A C T G C T A G A G T C G T A C C T G A A C T G C G A T A C T G C G T A A T G C T G C A A C T G T C G A T G C A G T C A
p-value:1e-13
log p-value:-3.067e+01
Information Content per bp:1.701
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 17.2bp
Average Position of motif in Background42.8 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT
TGTCTGDCACCT----
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT-
------NNACTTGCCTT
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TKTCTGTCACTGGCCT
CTGTCTGTCACCT----
 A C G T A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:TKTCTGTCACTGGCCT-
---AGGTCANTGACCTN
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T A C G T
A C G T A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TKTCTGTCACTGGCCT
-VGCTGWCAVB-----
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT
----TGACCTTGACCT
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

MEIS3/MA0775.1/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT
--CCTGTCAA------
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT
---NTGTCAN------
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TKTCTGTCACTGGCCT
----TGTCANYT----
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:10
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TKTCTGTCACTGGCCT
----TGACCTTGACCT
 A C G T A C G T A G C T T A G C A C G T A T C G C G A T A G T C G C T A A G T C A G C T A C T G A C T G G A T C A G T C A G C T
A C G T A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T