Information for 3-GGCAAGGAGGCCA (Motif 5)

A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A T G C A G T C A C G T A G T C A G T C C G A T A C G T C A T G A G T C A G T C
p-value:1e-13
log p-value:-3.067e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 23.2bp
Average Position of motif in Background53.3 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCAAGGAGGCCA
---AAYTAGGTCA
 A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGCAAGGAGGCCA---
NTNNNAGGAGTCTCNTN
 A C G T A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGCAAGGAGGCCA
---ATCAAGGTCA
 A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGAGGCCA
AAGGCAAGTGT----
 A C G T A C G T A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GGCAAGGAGGCCA-
------AAGGTCAC
 A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GGCAAGGAGGCCA
-----TRAGGTCA
 A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGCAAGGAGGCCA
-----AGRGGTCA
 A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GGCAAGGAGGCCA---
NGAGGTCANNGAGTTCANNN
 A C G T A C G T A C G T A C G T A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGGAGGCCA
GAGGTCAAAAGGTCA
 A C G T A C G T A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCAAGGAGGCCA
TGGCACCATGCCAA
 A C G T A C T G A C T G G A T C C G T A C G T A A C T G A C T G C G T A A C T G A T C G A G T C A G T C C G T A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A