Information for 14-AGGAGGCATT (Motif 19)

C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A T C G A G T C A G T C A C G T A G T C A G T C A G C T
p-value:1e-6
log p-value:-1.485e+01
Information Content per bp:1.882
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif64.0
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets56.1 +/- 15.6bp
Average Position of motif in Background47.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0125.1_Obox5_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGAGGCATT-------
NANAGGGATTAATTATN
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0137.1_Pitx1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGCATT------
TTAGAGGGATTAACAAT
 A C G T C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGAGGCATT-
---NGGGATTA
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

PH0130.1_Otx2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGAGGCATT-------
TGTAGGGATTAATTGTC
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGAGGCATT-------
TGAAGGGATTAATCATC
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGGAGGCATT
GATGAGTCATN
 A C G T C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T
T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGAGGCATT-------
AGAGGGGATTAATTTAT
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0123.1_Obox3/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGCATT------
TGAGGGGGATTAACTAT
 A C G T C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGAGGCATT-------
TAGAGGGATTAAATTTC
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

JDP2/MA0655.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGGAGGCATT
ATGAGTCAT-
 C T G A C T A G A C T G C G T A C T A G A C T G A T G C C G T A A C G T A C G T
C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T