Information for 6-CCAGAGGGCSCTGCAG (Motif 8)

A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G
Reverse Opposite:
A G T C A C G T C A T G A G T C C G T A A C T G T A G C A C T G A G T C A G T C A G T C A G C T A T G C C A G T C T A G A T C G
p-value:1e-13
log p-value:-3.068e+01
Information Content per bp:1.789
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.2 +/- 16.6bp
Average Position of motif in Background40.5 +/- 19.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCAGAGGGCSCTGCAG----
---AATCGCACTGCATTCCG
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCAGAGGGCSCTGCAG
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CCAGAGGGCSCTGCAG
TGGCCACCAGGGGGCGCTA---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------CCAGAGGGCSCTGCAG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CCAGAGGGCSCTGCAG------
-------DCHCAGCAGGRGGCC
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CCAGAGGGCSCTGCAG-
NNNNTGAGCACTGTNNG
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.49
Offset:8
Orientation:forward strand
Alignment:CCAGAGGGCSCTGCAG----
--------CACAGCAGGGGG
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0052.1_Plagl1_1/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CCAGAGGGCSCTGCAG-
-TTGGGGGCGCCCCTAG
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T
A C G T A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

GFY(?)/Promoter/Homer

Match Rank:9
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:CCAGAGGGCSCTGCAG-
-----GGGAATTGTAGT
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.47
Offset:5
Orientation:forward strand
Alignment:CCAGAGGGCSCTGCAG----
-----GAGCACAGCAGGACA
 A T G C A G T C G C T A A T C G C T G A C T A G C T A G A C T G T G A C A T C G A G T C A C G T C T A G G A T C G T C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A