Information for 6-GGAGAGDTCACAASAG (Motif 13)

C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
Reverse Opposite:
A G T C A G C T A T G C G A C T G A C T A C T G A G C T C T A G G T C A G T A C A G T C A G C T A G T C C G A T A G T C A G T C
p-value:1e-10
log p-value:-2.405e+01
Information Content per bp:1.756
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.1 +/- 27.1bp
Average Position of motif in Background63.0 +/- 20.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GGAGAGDTCACAASAG
NTNNNGGGGTCANGNNN-
 A C G T A C G T C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGDTCACAASAG
GGCGAGGGGTCAAGGGC-
 A C G T A C G T C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGAGAGDTCACAASAG
--AGRGGTCA------
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGAGAGDTCACAASAG
---AAGGTCAC-----
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGAGDTCACAASAG
--TRAGGTCA------
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGAGAGDTCACAASAG
-CAAAGGTCAAGGG--
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GGAGAGDTCACAASAG
------GTCACATGAY
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GGAGAGDTCACAASAG---
----ATGTCACAACAACAC
 C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGAGAGDTCACAASAG
CAGTGTGGTCGC-----
 A C G T C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C A C G T A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGAGAGDTCACAASAG
TCTCAAAGGTCACCTG--
 A C G T A C G T C T A G A C T G C G T A A C T G C T G A A C T G C A G T A C G T A G T C C T G A A G T C C T G A C G T A A T C G C T G A T A C G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T A C G T