Information for 5-AAGCAATAGCAGC (Motif 6)

C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
Reverse Opposite:
A C T G A T G C C G A T A C T G A G T C G A C T G T C A A C G T A C G T A C T G A G T C A C G T A G C T
p-value:1e-14
log p-value:-3.356e+01
Information Content per bp:1.828
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.3 +/- 25.6bp
Average Position of motif in Background41.2 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX9/MA0077.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AAGCAATAGCAGC
GAACAATGG----
 C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAATAGCAGC
TCACGGAACAATAGGTG-
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AAGCAATAGCAGC
RAACAATGGN---
 C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAATAGCAGC
VRAACAATGG----
 A C G T C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAGCAATAGCAGC
GAACAATGGN---
 C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AAGCAATAGCAGC
NAACAAT------
 C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAGCAATAGCAGC---
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGCAATAGCAGC
HNRAATCAAT------
 A C G T A C G T A C G T C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGCAATAGCAGC---
GAACAATTGCAGTGTT
 C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C A C G T A C G T A C G T
C T A G C G T A C T G A A G T C C T G A C T G A A C G T A C G T C A T G A G T C C T G A A C T G A C G T C T A G A G C T C G A T

PB0070.1_Sox30_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAGCAATAGCAGC
AATGAACAATGGAATT
 A C G T A C G T A C G T C T G A C G T A C T A G A G T C C G T A C G T A A C G T C T G A C T A G A G T C C G T A A T C G A G T C
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T